Dataset | Model name | Example of | Combinatorics of pathways | Validation | Pathways with | ||||||
---|---|---|---|---|---|---|---|---|---|---|---|
maximized | nonrelevant flux | ||||||||||
function | R 19 | R 15 | R 14 | R 8 | R 64 | R 63 | R 13 | values | |||
NADPH | OAA →G3P | OAA →PYR | G3P →G6P | Peptide | Peptide | Pyr→ OAA | |||||
oxidation | hydrolysis | synthesis | |||||||||
Extreme flux distributions within the set of plausible solutions | (Ctrl) | B | v 15- v 19 | 0 | 1831 | 0 | 0 | 0 | 125 | 1835 | R 13, R 64 |
(CN) | 795 | 150 | 803 | ||||||||
(Ctrl) | F | v 14- v 19 | 0 | 0 | 1831 | 0 | 0 | 125 | 1835 | R 13, R 64 | |
(CN) | 795 | 150 | 803 | ||||||||
(Ctrl) | D | v 8- v 19 | 0 | 0 | 0 | 3662 | 0 | 125 | 4 | R 8, R 64 | |
(CN) | 1590 | 150 | 8 | ||||||||
(Ctrl) | H | v 64- v 19 | 0 | 0 | 0 | 0 | 305 | 430 | 4 | ||
(CN) | 133 | 283 | 8 | ||||||||
(Cntl) | A | v 15 + v 19 | 694 | 1714 | 0 | 0 | 0 | 125 | 1718 | R 13, R 64 | |
(CN) | 22 | 791 | 150 | 799 | |||||||
(Ctrl) | E | v 14 + v 19 | 694 | 0 | 1714 | 0 | 0 | 125 | 1718 | R 13, R 64 | |
(CN) | 22 | 791 | 150 | 799 | |||||||
(Ctrl) | C | v 8 + v 19 | 694 | 0 | 0 | 3428 | 0 | 125 | 4 | R 8, R 64 | |
(CN) | 22 | 1583 | 150 | 8 | |||||||
(Ctrl) | G | v 64 + v 19 | 669 | 0 | 0 | 0 | 286 | 410 | 4 | ||
(CN) | 22 | 132 | 282 | 8 | |||||||
Litterature-based upperbounds for fluxes | ≤ 591 | Non-zero | Lower than | ≤ 266 mmol/h/half | |||||||
mmol/ | whole body | udder [33] | |||||||||
h/half udder [33] | protein synthesis [29] |