From: Two-layer modular analysis of gene and protein networks in breast cancer
Module Id | 1 | 2 | 3 | 4 | 5 | 6 | 7 | #U Sum |
---|---|---|---|---|---|---|---|---|
Topological analysis | ||||||||
Genes | 142 | 142 | 125 | 40 | 35 | 22 | 7 | 513 |
Expressed proteins | 640 | 486 | 439 | 159 | 152 | 79 | 10 | 1958 |
PPI | 7465 | 6576 | 8163 | 2106 | 1317 | 885 | 126 | 24752 |
Processed protein in PPI | 3284 | 3206 | 3187 | 1338 | 797 | 575 | 114 | 6519 |
Processed PPI | 6951 | 6095 | 7712 | 1985 | 1250 | 794 | 113 | 23173 |
α | 1.606 | 1.632 | 1.576 | 1.701 | 1.658 | 1.698 | 1.777 | |
Qmax | 0.637 | 0.662 | 0.632 | 0.714 | 0.792 | 0.798 | 0.793 | |
Modules (Isolated modules) | 309 (7) | 259 (4) | 28 (11) | 26 (10) | 23 (8) | 17 (7) | 6 (4) | 155 (51) |
%age accuracy, LOO-CV | 86.510 | 87.410 | 95.199 | 99.028 | 99.624 | 100 | 100 | |
Avg. Qmax, LOO-CV | 0.639 | 0.664 | 0.634 | 0.714 | 0.797 | 0.797 | 0.791 | |
Module range, LOO-CV | 24-33 | 20-28 | 24-34 | 25-32 | 21-25 | 16-18 | 5-6 | |
Avg. Modules, LOO-CV | 28 | 26 | 28 | 26 | 22 | 16 | 5 | |
Biological analysis | ||||||||
GO:BP, Groups | 137 | 135 | 111 | 71 | 45 | 34 | 6 | 539 |
GO:BP, Terms | 96 | 117 | 96 | 67 | 47 | 37 | 8 | 205 |
GO:BP, Referenced | 42 | 54 | 46 | 32 | 25 | 19 | 8 | 85 |
GO:MF, Groups | 131 | 124 | 115 | 69 | 44 | 35 | 7 | 525 |
GO:MF, Terms | 79 | 72 | 72 | 51 | 33 | 30 | 10 | 145 |
GO:MF, Referenced | 55 | 40 | 43 | 34 | 24 | 23 | 8 | 91 |
GO:CC, Groups | 112 | 95 | 92 | 55 | 42 | 32 | 6 | 434 |
GO:CC, Terms | 15 | 14 | 14 | 11 | 10 | 13 | 6 | 23 |
GO:CC, Referenced | 12 | 11 | 12 | 9 | 8 | 9 | 6 | 16 |