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Table 1 SNPs selected for DNA methylation and genotype measured by the Nsp microarray.

From: Genes associated with genotype-specific DNA methylation in squamous cell carcinoma as candidate drug targets

Rank

SNPs

 

50

SNP_A-1825620

SNP_A-2213037

SNP_A-2145008

SNP_A-2309865

 

SNP_A-4233167

   

100

SNP_A-2172952

SNP_A-2234716

SNP_A-1984943

SNP_A-2121000

 

SNP_A-2085071

   

150

SNP_A-2040111

SNP_A-4195285

SNP_A-4199352

SNP_A-2089983

 

SNP_A-1944699

SNP_A-1988914

SNP_A-1834529

SNP_A-1950742

 

SNP_A-2105346

SNP_A-4235277

  

200

SNP_A-4229534

SNP_A-4226834

SNP_A-4196078

SNP_A-2199615

 

SNP_A-1919825

SNP_A-2276203

SNP_A-1961374

 

250

SNP_A-1989613

SNP_A-1845324

SNP_A-1880907

SNP_A-2142865

 

SNP_A-2124767

SNP_A-1810962

SNP_A-4193660

SNP_A-1852621

 

SNP_A-1961109

SNP_A-4212314

SNP_A-2042678

SNP_A-1886593

 

SNP_A-1980533

SNP_A-2143521

SNP_A-2088571

 

300

SNP_A-2043441

SNP_A-2287632

SNP_A-2056366

SNP_A-2185001

 

SNP_A-1910539

SNP_A-4213049

SNP_A-2007288

SNP_A-4228665

 

SNP_A-4236336

SNP_A-2063926

SNP_A-1911642

SNP_A-1950919

 

SNP_A-2053247

SNP_A-4197286

SNP_A-4204073

SNP_A-2221049

 

SNP_A-2065785

   
  1. The 59 selected SNPs (probes) that exhibited significant differences between blood, and normal and tumor tissues, within the top N (= 50, 100, 150, 200, 250, and 300) outliers for both DNA methylation and genotype. Top 300 outliers are shown in red in Fig. 3. For detailed annotations, including associated genes, of the selected SNPs, see Additional file 1 (sheet name Nsp).
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BMC Systems Biology

ISSN: 1752-0509

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