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Table 2 SNPs measured by the Sty microarray using PC4 for genotype and PC3 for DNA methylation.

From: Genes associated with genotype-specific DNA methylation in squamous cell carcinoma as candidate drug targets

Rank

SNPs

 

50

SNP_A-2176803

SNP_A-2114077

SNP_A-4286712

SNP_A-4277414

SNP_A-4276813

SNP_A-2134351

100

SNP_A-4252327

SNP_A-4271493

SNP_A-4261117

SNP_A-1955805

150

SNP_A-2278684

SNP_A-2159288

SNP_A-1798268

 

200

SNP_A-1975466

   

250

SNP_A-2221439

SNP_A-2198500

SNP_A-2175811

SNP_A-4259136

SNP_A-2186260

300

SNP_A-4247667

SNP_A-4296608

SNP_A-4302067

 
  1. The 22 selected SNPs (probes) that exhibited significant difference between blood, and normal and tumor tissues, within the top N (= 50, 100, 150, 200, 250, and 300) outliers for both DNA methylation and genotype. Top 300 outliers are shown in red in Figures 6b and 6c. For detailed annotations, including associated genes, of the selected SNPs, see Additional file 1 (sheet name Sty1).
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BMC Systems Biology

ISSN: 1752-0509

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