Predicting protein complex in protein interaction network - a supervised learning based method

BMC Systems Biology

Table 10 Performance comparison with Qi et al.'s method

	MIPS(training set)						TAP06(training set)
	TAP06(testing set)						MIPS(testing set)
Method	Num	Ncp	P	Ncb	R	F	Num	Ncp	P	Ncb	R	F
Ours	271	115	0.424	65	0.433	0.429	262	128	0.489	105	0.525	0.506
SCI-BN			0.312		0.489	0.381			0.219		0.537	0.312
SCI-SVM			0.247		0.377	0.298			0.176		0.379	0.24
MCODE	45	19	0.422	19	0.127	0.195	45	18	0.4	20	01	0.160
ClusterOne	173	83	0.480	69	0.46	0.470	173	74	0.428	87	0.435	0.431
COACH	294	114	0.387	80	0.533	0.449	294	107	0.364	99	0.495	0.419
CMC	161	72	0.447	53	0.353	0.395	161	74	0.460	76	0.380	0.416
	MIPS, Aloy and SGD(training set)						TAP06, Aloy and SGD(training set)
	TAP06(testing set)						MIPS(testing set)
Ours1	274	119	0.434	69	0.46	0.447	270	142	0.526	102	0.51	0.518

ISSN: 1752-0509