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Table 1 The six clustering algorithms and their parameters used for small complex discovery.

From: Discovery of small protein complexes from PPI networks with size-specific supervised weighting

Clustering algorithm Parameters
CMC overlap thres = 1, merge_thres = 1
ClusterONE all default
IPCA -P1 -T0.4
MCL -I 2
RNSC -e10 -D50 -d10 -t20 -T3
PPSampler2 -f1DenominatorExponent 1 -f2