Table 1 The six clustering algorithms and their parameters used for small complex discovery.
From: Discovery of small protein complexes from PPI networks with size-specific supervised weighting
Clustering algorithm | Parameters |
|---|---|
CMC | overlap thres = 1, merge_thres = 1 |
ClusterONE | all default |
IPCA | -P1 -T0.4 |
MCL | -I 2 |
RNSC | -e10 -D50 -d10 -t20 -T3 |
PPSampler2 | -f1DenominatorExponent 1 -f2 |