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Table 2 Comparison with state-of-the-art methods.

From: Modeling DNA affinity landscape through two-round support vector regression with weighted degree kernels

 

PWM

HK→ ME

SVR w. WD

Our Method

RMSE

20.2

25.4

22.5

16.9

RMSRE

46%

51%

58%

44%

Pearson Cor

0.56

0.49

0.70

0.84

Spearman Cor

0.50

0.45

0.50

0.68

  1. "PWM" represents the position weight matrix model. "HK→ ME" represents the linear model in [21]. "SVR w. WD" represents SVR with WD kernel without mismatch or shift. All values are the averages over the same 10-fold CV. The best values in each row are in bold.
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BMC Systems Biology

ISSN: 1752-0509

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