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Table 2 Comparison with state-of-the-art methods.

From: Modeling DNA affinity landscape through two-round support vector regression with weighted degree kernels

  PWM HK→ ME SVR w. WD Our Method
RMSE 20.2 25.4 22.5 16.9
RMSRE 46% 51% 58% 44%
Pearson Cor 0.56 0.49 0.70 0.84
Spearman Cor 0.50 0.45 0.50 0.68
  1. "PWM" represents the position weight matrix model. "HK→ ME" represents the linear model in [21]. "SVR w. WD" represents SVR with WD kernel without mismatch or shift. All values are the averages over the same 10-fold CV. The best values in each row are in bold.
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BMC Systems Biology

ISSN: 1752-0509

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