Transcription factor and microRNA-regulated network motifs for cancer and signal transduction networks

BMC Systems Biology

Table 2 A comparison of motif finding by the adjacency matrix approach and FANMOD

approach	motif	AML	Glioma	Melanoma	NSCLC	PC	RCC
Adjacency Matrix	FFL	0 ^§	0 ^§	0 ^§	1	1	1
	bi-fan	1 ^§	1 ^§	1	1	0 ^§	0 ^§
FANMOD	FFL	0 ^§	0 ^§	0 ^§	0 (FN)	0 (FN)	0 (FN)
	bi-fan	1 ^§	1 ^§	0 (FN)	0 (FN)	0 ^§	0 ^§
	Non bi-fan	2(2)*	1(1)*	0(0)*	2(2)*	3(3)*	3(1)*

^§given a fixed motif size, the italic and underlined fonts denote the results uisng adjacency matrix approach are consistent with those of FANMON, i.e. true positive or true negative events
* the first number denotes the number of identified motifs, the number inside the parenthesis denotes the total number of motif pattern found in the cancer type

ISSN: 1752-0509