Table 3 Performance comparison for 8-way network alignment.
From: Accurate multiple network alignment through context-sensitive random walk
| Â | DMC | DMR | CG | ||||||
|---|---|---|---|---|---|---|---|---|---|
| Â | CN | SPE | MNE | CN | SPE | MNE | CN | SPE | MNE |
Proposed | 6,621.3 | 0.901 | 0.080 | 6,467.2 | 0.891 | 0.090 | 6,345.4 | 0.884 | 0.090 |
SMETANA | 6,336.7 | 0.869 | 0.106 | 6,195.2 | 0.860 | 0.114 | 6,481.2 | 0.897 | 0.079 |
BEAMS | 6,083.1 | 0.825 | 0.163 | 6,063.5 | 0.826 | 0.162 | 6,537.6 | 0.877 | 0.111 |
NetCoffee | 5,127.2 | 0.757 | 0.206 | 5,084.1 | 0.750 | 0.213 | 4,944.1 | 0.724 | 0.239 |
IsoRankN | 4,069.1 | 0.644 | 0.268 | 3,916.7 | 0.623 | 0.284 | 3,860 | 0.612 | 0.291 |
Proposed (all 8 species) | 4116 | 0.961 | 0.034 | 3473.7 | 0.930 | 0.059 | 3689.5 | 0.945 | 0.043 |
SMETANA (all 8 species) | 3686.7 | 0.920 | 0.066 | 3348.9 | 0.907 | 0.075 | 3785.6 | 0.960 | 0.031 |
BEAMS (all 8 species) | 2897.9 | 0.905 | 0.095 | 3054.7 | 0.901 | 0.099 | 3475.1 | 0.989 | 0.011 |
NetCoffee (all 8 species) | 3300.8 | 0.837 | 0.136 | 3331.8 | 0.822 | 0.148 | 3317.8 | 0.800 | 0.172 |
IsoRankN (all 8 species) | 2002.8 | 0.569 | 0.284 | 1775.8 | 0.542 | 0.303 | 2161.6 | 0.536 | 0.303 |