Accurate multiple network alignment through context-sensitive random walk

BMC Systems Biology

Table 6 Multiple network alignment results for real PPI networks (for 3 species).

	D.me-C.el-H.sa			S.ce-C.el-H.sa			S.ce-D.me-C.el			S.ce-D.me-H.sa
	CN	SPE	MNE	CN	SPE	MNE	CN	SPE	MNE	CN	SPE	MNE
Proposed	4331	0.705	0.289	3077	0.709	0.281	3581	0.746	0.247	3637	0.672	0.326
SMETANA	3871	0.663	0.331	2625	0.657	0.333	3227	0.714	0.279	3108	0.616	0.380
BEAMS	4354	0.676	0.316	3084	0.671	0.320	3606	0.727	0.267	3629	0.627	0.366
NetCoffee	1471	0.552	0.451	1234	0.575	0.426	1477	0.593	0.414	1877	0.540	0.465
IsoRankN	4423	0.717	0.279	3131	0.711	0.282	3464	0.749	0.245	3752	0.684	0.313
NodeSimilarity	4775	0.746	0.248	3457	0.737	0.256	3920	0.798	0.197	4132	0.719	0.278
Proposed (all 3-species)	3926	0.702	0.290	2387	0.724	0.265	2624	0.715	0.271	2540	0.681	0.315
SMETANA (all 3-species)	3442	0.671	0.323	2106	0.677	0.312	2378	0.685	0.301	2225	0.630	0.363
BEAMS (all 3-species)	3867	0.687	0.304	2277	0.711	0.278	2573	0.718	0.272	2441	0.672	0.318
NetCoffee (all 3-species)	747	0.518	0.478	578	0.528	0.465	713	0.538	0.462	1167	0.516	0.489
IsoRankN (all 3-species)	3757	0.753	0.241	2323	0.775	0.215	2470	0.732	0.258	2510	0.726	0.267

ISSN: 1752-0509