Table 1 Comparisons between StochKit, the SSA implementation on the R-System and our approach for a MM reaction scheme.
From: Modelling non-Markovian dynamics in biochemical reactions
Gecode | R-System | StochKit | |||
|---|---|---|---|---|---|
2 | Time | Iterations | Time | Iterations | Time Iterations |
100 | 0.28 | 500 | 1.10 | 10412.40 | 0.04 5 |
10−1 | 0.35 | 500 | 28.78 | 99929.2 | 0.11 48 |
10−2 | 0.39 | 500 | 1855.92 | 990849.5 | 0.26 500 |
10−3 | 0.43 | 500 | - | - | 0.78 5000 |
10−4 | 0.42 | 500 | - | - | 7.75 50000 |
10−5 | 0.39 | 500 | - | - | 77.50 500000 |