Table 7 The prediction results by our method, ZRANK+FiberDock and ClusPro on Benchmark v4.0.
From: Structural neighboring property for identifying protein-protein binding sites
Subseta | No. of cases | our method | ZRANK+FiberDock | ClusPro | ||||||
|---|---|---|---|---|---|---|---|---|---|---|
I rmsd | F nat | F non−nat | I rmsd | F nat | F non−nat | I rmsd | F nat | F non−nat | ||
Rigid body | 123 | 2.89 | 69% | 35% | 3.31 | 56% | 49% | 3.33 | 55% | 51% |
Medium difficult | 29 | 3.38 | 59% | 39% | 4.46 | 39% | 59% | 4.71 | 30% | 69% |
Difficult | 24 | 5.41 | 36% | 58% | 6.18 | 28% | 67% | 6.53 | 21% | 77% |
Overall | 176 | 3.31 | 63% | 39% | 3.89 | 49% | 53% | 3.99 | 46% | 58% |