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Table 7 The prediction results by our method, ZRANK+FiberDock and ClusPro on Benchmark v4.0.

From: Structural neighboring property for identifying protein-protein binding sites

Subseta No. of cases our method ZRANK+FiberDock ClusPro
   I rmsd F nat F non−nat I rmsd F nat F non−nat I rmsd F nat F non−nat
Rigid body 123 2.89 69% 35% 3.31 56% 49% 3.33 55% 51%
Medium difficult 29 3.38 59% 39% 4.46 39% 59% 4.71 30% 69%
Difficult 24 5.41 36% 58% 6.18 28% 67% 6.53 21% 77%
Overall 176 3.31 63% 39% 3.89 49% 53% 3.99 46% 58%
  1. a Subset is based on the magnitude of conformational change after binding.