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Table 8 The prediction results by our method, ZRANK+FiberDock and ClusPro on CAPRI targets.

From: Structural neighboring property for identifying protein-protein binding sites

Target our method ZRANK+FiberDock ClusPro
  I rmsd F nat F non−nat I rmsd F nat F non−nat I rmsd F nat F non−nat
T01 4.54 10% 89% 8.10 7 % 88% 12.6 0 % 100%
T02 1.53 87% 11% 0.51 96% 3 % 19.0 0 % 100%
T03 7.69 8 % 91% 1.92 60% 37% 3.61 23% 67%
T04 3.98 34% 60% 4.56 23% 72% 10.5 1 % 85%
T05 9.74 7 % 72% 10.1 5 % 90% 1.95 56% 38%
T06 5.76 16% 66% 3.10 28% 70% 3.68 23% 69%
T07 4.77 11% 87% 6.43 3 % 88% 12.1 0 % 100%
T08 6.07 16% 69% 1.09 47% 51% 6.50 8 % 91%
T09 2.85 33% 66% 9.77 8 % 80% 24.7 0 % 100%
T10 3.52 29% 66% 5.05 11% 77% 6.18 5 % 88%
T11 2.56 61% 35% 2.63 61% 38% 3.12 42% 54%
T12 1.55 76% 23% 0.65 84% 15% 0.78 93% 4 %
T13 0.63 94% 4 % 2.38 54% 39% 3.98 32% 64%
T14 9.62 4 % 87% 0.95 73% 25% 1.89 51% 45%
T15 1.40 69% 28% 0.86 91% 7 % 1.83 51% 47%
T18 3.08 25% 67% 1.86 66% 31% 3.70 21% 69%
T19 1.74 59% 38% 10.3 3 % 88% 2.58 32% 62%
T20 7.48 5 % 83% 6.31 7 % 79% 3.24 21% 74%
T21 1.56 84% 15% 3.23 36% 59% 2.78 67% 32%
T22 2.48 75% 19% 5.61 5 % 86% 3.12 42% 49%
T23 1.90 61% 34% 1.34 72% 27% 4.80 16% 70%
T24 2.01 50% 48% 3.13 20% 75% 5.65 2 % 89%
T25 2.13 57% 40% 1.51 64% 33% 1.85 65% 32%
T26 0.89 84% 14% 0.93 78% 20% 1.21 54% 43%
T27 1.95 60% 39% 1.86 59% 37% 3.70 21% 73%
T29 2.46 69% 25% 3.13 49% 50% 3.57 42% 49%
T30 7.48 9 % 79% 4.84 16% 77% 5.40 11% 75%
T32 2.98 34% 59% 9.45 3 % 95% 0.52 87% 12%
T35 3.71 29% 62% 8.71 4 % 82% 6.90 7 % 83%
T36 3.70 27% 69% 3.64 25% 66% 6.20 9 % 79%
T37 1.25 53% 45% 0.93 92% 7 % 6.89 5 % 88%
T39 0.87 75% 24% 15.6 0 % 100% 1.60 56% 42%
T40 2.17 56% 43% 0.43 86% 13% 1.17 62% 36%
T41 1.09 67% 30% 1.45 46% 51% 1.20 51% 48%
T42 3.70 28% 68% 4.13 15% 75% 0.91 75% 24%