Table 8 The prediction results by our method, ZRANK+FiberDock and ClusPro on CAPRI targets.
From: Structural neighboring property for identifying protein-protein binding sites
Target | our method | ZRANK+FiberDock | ClusPro | ||||||
|---|---|---|---|---|---|---|---|---|---|
I rmsd | F nat | F non−nat | I rmsd | F nat | F non−nat | I rmsd | F nat | F non−nat | |
T01 | 4.54 | 10% | 89% | 8.10 | 7 % | 88% | 12.6 | 0 % | 100% |
T02 | 1.53 | 87% | 11% | 0.51 | 96% | 3 % | 19.0 | 0 % | 100% |
T03 | 7.69 | 8 % | 91% | 1.92 | 60% | 37% | 3.61 | 23% | 67% |
T04 | 3.98 | 34% | 60% | 4.56 | 23% | 72% | 10.5 | 1 % | 85% |
T05 | 9.74 | 7 % | 72% | 10.1 | 5 % | 90% | 1.95 | 56% | 38% |
T06 | 5.76 | 16% | 66% | 3.10 | 28% | 70% | 3.68 | 23% | 69% |
T07 | 4.77 | 11% | 87% | 6.43 | 3 % | 88% | 12.1 | 0 % | 100% |
T08 | 6.07 | 16% | 69% | 1.09 | 47% | 51% | 6.50 | 8 % | 91% |
T09 | 2.85 | 33% | 66% | 9.77 | 8 % | 80% | 24.7 | 0 % | 100% |
T10 | 3.52 | 29% | 66% | 5.05 | 11% | 77% | 6.18 | 5 % | 88% |
T11 | 2.56 | 61% | 35% | 2.63 | 61% | 38% | 3.12 | 42% | 54% |
T12 | 1.55 | 76% | 23% | 0.65 | 84% | 15% | 0.78 | 93% | 4 % |
T13 | 0.63 | 94% | 4 % | 2.38 | 54% | 39% | 3.98 | 32% | 64% |
T14 | 9.62 | 4 % | 87% | 0.95 | 73% | 25% | 1.89 | 51% | 45% |
T15 | 1.40 | 69% | 28% | 0.86 | 91% | 7 % | 1.83 | 51% | 47% |
T18 | 3.08 | 25% | 67% | 1.86 | 66% | 31% | 3.70 | 21% | 69% |
T19 | 1.74 | 59% | 38% | 10.3 | 3 % | 88% | 2.58 | 32% | 62% |
T20 | 7.48 | 5 % | 83% | 6.31 | 7 % | 79% | 3.24 | 21% | 74% |
T21 | 1.56 | 84% | 15% | 3.23 | 36% | 59% | 2.78 | 67% | 32% |
T22 | 2.48 | 75% | 19% | 5.61 | 5 % | 86% | 3.12 | 42% | 49% |
T23 | 1.90 | 61% | 34% | 1.34 | 72% | 27% | 4.80 | 16% | 70% |
T24 | 2.01 | 50% | 48% | 3.13 | 20% | 75% | 5.65 | 2 % | 89% |
T25 | 2.13 | 57% | 40% | 1.51 | 64% | 33% | 1.85 | 65% | 32% |
T26 | 0.89 | 84% | 14% | 0.93 | 78% | 20% | 1.21 | 54% | 43% |
T27 | 1.95 | 60% | 39% | 1.86 | 59% | 37% | 3.70 | 21% | 73% |
T29 | 2.46 | 69% | 25% | 3.13 | 49% | 50% | 3.57 | 42% | 49% |
T30 | 7.48 | 9 % | 79% | 4.84 | 16% | 77% | 5.40 | 11% | 75% |
T32 | 2.98 | 34% | 59% | 9.45 | 3 % | 95% | 0.52 | 87% | 12% |
T35 | 3.71 | 29% | 62% | 8.71 | 4 % | 82% | 6.90 | 7 % | 83% |
T36 | 3.70 | 27% | 69% | 3.64 | 25% | 66% | 6.20 | 9 % | 79% |
T37 | 1.25 | 53% | 45% | 0.93 | 92% | 7 % | 6.89 | 5 % | 88% |
T39 | 0.87 | 75% | 24% | 15.6 | 0 % | 100% | 1.60 | 56% | 42% |
T40 | 2.17 | 56% | 43% | 0.43 | 86% | 13% | 1.17 | 62% | 36% |
T41 | 1.09 | 67% | 30% | 1.45 | 46% | 51% | 1.20 | 51% | 48% |
T42 | 3.70 | 28% | 68% | 4.13 | 15% | 75% | 0.91 | 75% | 24% |