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Figure 3 | BMC Systems Biology

Figure 3

From: YAGM: a web tool for mining associated genes in yeast based on diverse biological associations

Figure 3

The search result page. The search result page can be divided into three parts. (a) The first part contains the basic information (name, chromosome location, description, sequence, and MIPS functional catalogue) of the query gene. (b) The second part contains two network graphs connecting the query gene with all its associated genes. The first network graph is called the confidence view. The edge between the query gene and its associated gene in the network reflects the overall association score (OAS). The higher the OAS, the wider and shorter the edge. The second network graph is called the evidence view. The edge between the query gene and its associated gene in the network indicates that this gene pair has the evidence of a specific biological association. This means that the association score of this gene pair under that biological association is higher than the 95th percentile of the association scores of all gene pairs in the yeast genome. (c) The third part is a table listing the associated genes. In the table, the information of each associated gene contains the evidences of specific biological associations, the OAS, and a link of "Detail".

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