From: YAGM: a web tool for mining associated genes in yeast based on diverse biological associations
Biological Association | Parameters of the Hypergeometric Test |
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TF Regulation/TF Binding | N: # of TFs collected from YEASTRACT n: # of TFs that regulate/bind to gene a m: # of TFs that regulate/bind to gene b k: # of TFs that regulate/bind to both gene a and gene b |
Mutant Phenotype/Literature Evidence | N: # of mutant phenotypes/literature evidences collected from SGD n: # of mutant phenotypes/literature evidences of gene a m: # of mutant phenotypes/literature evidences of gene b k: # of mutant phenotypes/literature evidences of both gene a and gene b |
Functional Annotation | N: # of functional annotations collected from MIPS n: # of functional annotations of gene a m: # of functional annotations of gene b k: # of functional annotations of both gene a and gene b |
Physical Interaction/Genetic Interaction | N: # of genes in the yeast genome n: # of genes that have physical/genetic interactions with gene a m: # of genes that have physical/genetic interactions with gene b k: # of genes that have physical/genetic interactions with both gene a and gene b |