From: A curated C. difficile strain 630 metabolic network: prediction of essential targets and inhibitors
Characteristic | Automatic network | iMLTC806cdf | C. acetobutylicum iCAC490 | ||
---|---|---|---|---|---|
Reactions | 3211 | 914 | 740 | ||
With genes | 1311 (40.8%) | 706 (77.9%) | 490 (66.2%) | ||
With an EC number | 1435 (44.7%) | 750 (82.1%) | 649 (87.7%) | ||
With KEGG ID | 1038 (32.3%) | 703 (76.9%) | 652 (88.4%) | ||
Identified as unclear reaction | 4 (0.4%) | 0 | 2 (0.2%) | ||
Associated with multiple reactions | 84 (8.1.6%) | 6 (0.7%) | 0 | ||
Involving polymers | 26 (0.8%) | 0 | 0 | ||
Involving generic metabolites | 548 (29.8%) | 31 (3.4%) | 44 (5.9%) | ||
Non-metabolic reactions | 138 (4.3%) | 2 (0.2%) | 15 (2.0%) | ||
Involving oxygen | 29 (0.9%) | 0 | -b | ||
Transport reactions | 1576 (49.1%) | 145 (15.9%) | 66 (8.9%) | ||
Export | 1562 (99.1%) | 16 (11.0%) | 3 (4.5%) | ||
Passive | 14 (0.9%) | 15 (10.3%) | 11 (16.7%) | ||
with genes | 0 | 95 (65.5%) | 43 (65.15%) | ||
Unique reactions in common | Â | 530 | Â | 416 | Â |
Metabolites | 3133 | 705 | 709 | ||
Unique | 1551 | 592 | 654 | ||
With KEGG ID | 1092 (70.4%) | 563 (94.9%) | 613 (93.7%) | ||
Generic | 485 (31.3%) | 23 (3.9%) | 50 (7.6%) | ||
Duplicated | 15 (1.0%) | 0 | 0 | ||
Dead-end | 648 (41.8%) | 8 (1.2%) | 186 (28.4%) | ||
Unique metabolites in common | Â | 533 | Â | 389 | Â |
Genes | 1336 | 806 | 490 | ||
Unique loci | 788 | 806 | 490 | ||
With a homologa | 788 (100%) | 658 (81.8%) | 417 (85.1%) | ||
Non-metabolic loci | 66 (8.4%) | 3 (0.4%) | 11 (2.2%) | ||
Loci linked to multiple entries | 382 (48.5%) | 0 | Â | 0 | |
Unique loci in common | Â | 534 | Â | 350 | Â |