Rate | Description | Mathematical form | Parameter values | Â |
---|---|---|---|---|
tr1 | LacI transcription | constant: k | k=0.1 nMs -1 | Fitted |
tl1 | LacI translation | mass action: k.[lacI_t] | k = 0.2 s -1 | Fitted |
k1 | LacI inactivation by IPTG | mass action: k .[lacI_t].[IPTG] | k=0.000175 nM -1?s - | [44] |
k2 | LacI reactivation | mass action: k.[LacI_d] | k=0.016 s -1 | [44] |
tr2 | KinA transcription | hill function: | k1=0.0275 nMs -1 | |
k2=0.24 nMs -1 | ||||
k3=1.95 nMs -1 | ||||
KL=50 nM | ||||
KS=2100 nM | ||||
tl2 | KinA translation | mass action: k.[kinA_t] | k=0.0659 s -1 | Fitted |
k3 | KinA dimerization | mass action: k.[KinA] 2 | k=0.001 nM -1?s -1 | Fitted |
k4 | KinA dimer dissociation | mass action: k.[KinA:KinA] | k=0.25 s -1 | Fitted |
k5 | KinA dimer auto-phosphorylation | mass action: k.[KinA:KinA].[SS] | k=0.001 nM -1?s -1 | Fitted |
tr3 | Spo0F transcription | hill function: | k1=0.02 nMs-1 | |
k2=0.1 nMs-1 | ||||
KS=50 nM | ||||
tl3 | Spo0F translation | mass action: k.[Spo0F] | k=0.0723 s-1 | [16] |
k6 | Spo0F phosphorylation | mass action: k.[Spo0F] [KinA:KinA~P] | k=0.00039 nM -1?s -1 | [64] |
k7 | Spo0F dephosphorylation | mass action: k.[Spo0F~P] | k=0.05 s -1 | Â |
tr4 | Spo0B transcription | constant: k | k=0.2384 nMs -1 | Fitted |
tl4 | Spo0B translation | mass action: k.[Spo0B] | k=0.1076 s -1 | Fitted |
k8 | Spo0B phosphorylation | mass action: k.[Spo0B] [Spo0F~P] | k=0.00001 nM -1?s -1 | [64] |
tr5 | Spo0A transcription | hill function: | k1=0.01388 nMs -1 | [16] |
k=0.1388 nMs -1, | ||||
Kk1=100 nM, | ||||
Kk2=150 nM | ||||
tl5 | Spo0A translation | mass action: k.[Spo0A] | k=0.2143 s -1 | Fitted |
k9 | Spo0A phosphorylation | mass action: k.[Spo0A] [Spo0B~P] | k=0.0008 nM -1?s -1 | [64] |
k10 | Spo0A dephosphorylation | mass action: k.[Spo0~P] | k=0.05 s -1 | Â |
tr6 | spollA transcription | hill function: | k1=0.0277 nMs -1 | |
k2=0.4166 nMs -1 | ||||
Kk=140nM | ||||
tl6_A | AA translation | mass action: k [spollA_t] | k=0.1250 s -1 | Fitted |
tl6_B | AB translation | mass action: k [spollA_t] | k=0.0555 s -1 | Fitted |
tl6_C | AC translation | mass action: k [spollA_t] | k=0.0138 s -1 | Fitted |
tr7 | spollE transcription | hill function: | k1=0.0208 nMs -1 | |
k2=0.3125 nMs -1 | Â | |||
Kk=230 nM | ||||
tl7 | IIE translation | mass action: k [spollE_t] | k=0.0138 s -1 | [16] |
tr8 | spollG transcription | hill function: | k1=0.0222 nMs -1 | |
k2=0.7290 nMs -1 | ||||
Kk=1700 nM | ||||
tl8_A | GA translation | mass action: k [spollG_t] | k=0.0034 s -1 | [16] |
tl8_B | GB translation | mass action: k [spollG_t] | k=0.0138 s -1 | [16] |