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Table 1 Tumor stages across the three datasets

From: Urothelial cancer gene regulatory networks inferred from large-scale RNAseq, Bead and Oligo gene expression data

Tumor stage

RNAseq

Bead

Oligo

 

(# samples)

(# samples)

(# samples)

pTcis

  

5

pTa

1

24

35

pT1

1

80

16

pT2

57

31

22

pT3

91

19

51

pT4

29

11

29

pT2-4

  

30

Total

179

165

188

NMI

2

104

56

MI

177

61

132

Genes

20,161

18,956

12,495

  1. The RNAseq dataset consists mainly of muscle-invasive UC tumor samples. 30 samples of the Oligo dataset corresponded to the muscle invasive stages pT2 to pT4 and were not assigned a specific stage.
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BMC Systems Biology

ISSN: 1752-0509

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