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Table 1 Tumor stages across the three datasets

From: Urothelial cancer gene regulatory networks inferred from large-scale RNAseq, Bead and Oligo gene expression data

Tumor stage RNAseq Bead Oligo
  (# samples) (# samples) (# samples)
pTcis    5
pTa 1 24 35
pT1 1 80 16
pT2 57 31 22
pT3 91 19 51
pT4 29 11 29
pT2-4    30
Total 179 165 188
NMI 2 104 56
MI 177 61 132
Genes 20,161 18,956 12,495
  1. The RNAseq dataset consists mainly of muscle-invasive UC tumor samples. 30 samples of the Oligo dataset corresponded to the muscle invasive stages pT2 to pT4 and were not assigned a specific stage.