Table 5 GPEA analysis of gene family gene sets for the UC RNAseq, Bead and Oligo GRN
Tag | Name | RNAseq | Bead | Oligo |
|---|---|---|---|---|
CD | CD molecules | 380/591/0 | 365/319/1.1e-140 | 351/319/8.9e-106 |
ZKRAB | Zinc fingers, C2H2-type with KRAB domain | 338/764/0 | 306/289/5.3e-155 | 143/108/5.6e-64 |
RPL | L ribosomal proteins | 59/119/1.2e-175 | 55/49/2.2e-59 | 44/72/3.4e-102 |
ZNF | Zinc fingers, C2H2-type | 697/1307/0 | 641/515/4e-114 | 362/242/2.3e-53 |
HIST | Histones/Replication-dependent | 67/236/0 | 61/154/5.7e-252 | 26/32/1.3e-48 |
HLA | Histocompatibility complex | 24/46/1.1e-85 | 25/33/2.9e-57 | 19/22/9.1e-36 |
C1SET | Immunoglobulin superfamily/C1-set domain containing | 38/51/1e-75 | 38/34/1.5e-46 | 37/26/1.1e-28 |
KLK | Kallikreins | 17/26/1.2e-49 | 16/15/2.8e-26 | 14/14/1.7e-23 |
MT | Metallothioneins | 14/12/3.5e-20 | 12/12/7.1e-23 | 10/10/3.5e-18 |
PCDHC | Cadherins/Protocadherins : Clustered | 57/150/7.8e-242 | 56/24/6.6e-21 | 22/14/1.3e-17 |
IGD | Immunoglobulin superfamily/Immunoglobulin-like domain containing | 233/175/3.6e-85 | 221/77/5.1e-22 | 177/67/2.6e-17 |
KRT | Keratins | 55/87/1.4e-121 | 51/20/2.8e-17 | 35/20/1.5e-20 |
HOXL | Homeoboxes/ANTP class : HOXL subclass | 52/54/1.6e-66 | 50/39/1.8e-46 | 43/20/5.2e-17 |
COLLAGEN | Collagens | 46/37/3.4e-43 | 43/21/1.1e-21 | 33/17/5.5e-17 |
RPS | S ribosomal proteins | 34/40/7.2e-59 | 32/14/3.1e-15 | 29/28/6.1e-38 |
PSM | Proteasome (prosome, macropain) subunits | 45/25/4.1e-25 | 43/15/5e-13 | 42/26/7.7e-26 |
RBM | RNA binding motif (RRM) containing | 209/114/2.6e-46 | 186/50/1.6e-12 | 151/72/2.3e-28 |
ENDOLIG | Endogenous ligands | 230/77/7.9e-16 | 221/62/3.3e-13 | 192/62/2.8e-11 |
VSET | Immunoglobulin superfamily/V-set domain containing | 161/95/1.4e-50 | 150/42/5.2e-14 | 110/33/9e-11 |
comI | Mitochondrial respiratory chain complex/Complex I | 38/14/3.9e-12 | 38/12/2.6e-10 | 31/15/7.3e-15 |
UGT | UDP glucuronosyltransferases | 20/15/4.8e-22 | 20/17/2.3e-27 | 7/5/1.4e-08 |
IFF2 | Intermediate filaments type II, keratins (basic) | 26/23/2.6e-33 | 24/8/3e-08 | 15/7/1.8e-08 |
comIV | Mitochondrial respiratory chain complex/Complex IV | 16/13/8.5e-21 | 15/6/1.3e-07 | 12/7/6.3e-10 |
S100 | S100 calcium binding proteins | 21/12/1.1e-15 | 21/7/1.8e-07 | 17/7/1.1e-07 |
LNCRNA | Long non-coding RNAs | 548/407/1.2e-78 | 468/168/2e-14 | 107/25/5.4e-06 |
complement | Complement system | 35/18/3.8e-19 | 33/7/1e-04 | 30/9/9.6e-07 |
CYP | Cytochrome P450s | 62/37/1.1e-33 | 56/10/0.00019 | 48/22/1.2e-17 |
SERPIN | Serine (or cysteine) peptidase inhibitors | 36/21/2.1e-23 | 35/8/1.2e-05 | 30/7/0.00031 |