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Table 1 Feature comparison of CytoASP and BioQuali [15]

From: CytoASP: a Cytoscape app for qualitative consistency reasoning, prediction and repair in biological networks

 

CytoASP

BioQuali

Execution Model

Local

Remote (Web Service)

Reasoning Engine

ASP solvers (through ingranalyze & BioASP)

Decision Diagrams

Parallel Processing

Yes, multiple networks may be analysed simultaneously using all available CPU cores

No

Visualisation Options

Custom, user can select colors for visualisation

Fixed, colors are pre-selected

Repair Options

i) Flip observations, ii) Flip influences, iii) Define nodes as input, iv) Add influences

Neutralise influences

Repair Visualisation

Common repairs are visualised for all four repair modes

Neutralised influences

Repair Sets

Yes, all minimal repair sets for nodes / edges are calculated

No

Minimal Inconsistent Cores

Yes

No