Table 1 KEGG compound ID of small molecules and ions. This table gives the default list of all small molecules and ions that SBMLsqueezer ignores when creating kinetic equations. This list was created according to [68] and can be changed by the user through command-line options as well as a preferences dialog
From: SBMLsqueezer 2: context-sensitive creation of kinetic equations in biochemical networks
Chemical formula | Common name | KEGG ID |
|---|---|---|
H2O | Water | C00001 |
Zn2+ | Zinc ion | C00038 |
Cu2+ | Copper ion | C00070 |
Ca2+ | Calcium ion | C00076 |
H+ | Proton | C00080 |
Co2+ | Cobalt ion | C00175 |
K+ | Potassium ion | C00238 |
H2 | Hydrogen | C00282 |
Ni2+ | Nickel ion | C00291 |
Cl− | Chloride ion | C00698 |
HCl | Hydrochloric acid | C01327 |
H2Se | Hydrogen selenide | C01528 |
Fe2+ | Iron (II) ion | C14818 |
Fe3+ | Iron (III) ion | C14819 |