From: Mining for novel candidate clock genes in the circadian regulatory network
Type | Source | Characterized | Total | Circadian | Hits |
---|---|---|---|---|---|
Koike et al. [14] | BMAL1 | 3495 | 3004 | 359ns | |
PER1 | 2984 | 138 | 15ns | ||
PER2 | 4255 | 3495 | 384ns | ||
CRY1 | 6768 | 2923 | 356*** | ||
CRY2 | 5230 | 2717 | 318** | ||
CLOCK | 2831 | 1204 | 170*** | ||
ChIP-seq | NPAS | 1597 | 808 | 121ns | |
Rey et al. [15] | BMAL1 | 1273 | 439 | 228* | |
Cho et al. [16] | REV-ERB α | 3849 | - | 412 | |
REV-ERB β | 3849 | - | 412 | ||
Bugge et al. [21] | REV-ERB α | 6256 | - | 636 | |
Feng et al. [22] | REV-ERB β | 6444 | - | 635 | |
Fang et al. [23] | ROR α | 8457 | - | 529 | |
E4BP4 (NFIL3) | 6147 | - | 437 | ||
Proteomics | Robles et al. [25] | 2877 | 185 | 34** | |
Mauvoisin et al. [26] | 5610 | 193 | 35*** | ||
Chiang et al. [27] | 1881 | 47 | 6ns | ||
Protein-protein interaction | Wallach et al. [28] | 123 | - | 25 | |
467 | - | 33 |