Skip to main content

Table 2 New associated pathways and SNPs under glucose condition

From: A network based covariance test for detecting multivariate eQTL in saccharomyces cerevisiae

Pathways Associated markers
Synthesis and degradation of ketone bodies g J L07(10)
Inositol phosphate metabolism Y B R259W (10)
Riboflavin metabolism Y M L056C (10)
Fatty acid degradation Y B R045C (1)
Cysteine and methionine metabolism Y G L195W (1)
Valine, leucine and isoleucine biosynthesis Y C L025C L ,N G R093C L
  Y O R253W L ,Y O R274W L
  Y O R326W L ,Y O R334W L
  Y O R343C L ,Y C L022C (1)
Phenylalanine metabolism Y J R040W L ,Y O L123W L
  Y O L118C L ,Y O L106W L
  Y O L093W L ,Y O L088C L
  g O L02L,(1)
beta-Alanine metabolism Y B R271W L ,g O L02L,(1)
  N J R007C L ,Y O L106W L
Arachidonic acid metabolism Y I R022W L,(1)
Vitamin B6 metabolism Y K L118W (1)
Porphyrin and chlorophyll metabolism Y M L071C (1),g F L02L
Degradation of aromatic compounds Y M R316C L,(1),Y M R316C L
ABC transporters Y B R131W L,(1),Y B R137W L
Glycolysis/Gluconeogenesis Y J R071W L
Pentose phosphate pathway N O L043W L , Y O L151W L
  Y O L123W L , Y O L094C L
  Y O L093W L , Y O L088C L
  g O L02L
Pentose and glucuronate interconversions Y G L263W L
Purine metabolism Y L R140W L
Pyrimidine metabolism Y B L010C L , Y G L217C L
Glycine, serine and threonine metabolism Y C L065W L , Y J R038C L
Lysine biosynthesis Y B R087W L
Histidine metabolism Y B R271W L , N J R007C L
  Y J R040W L , Y J R057W L
  Y O L106W L , Y O L093W L ,
  g O L02L,(1)
Tyrosine metabolism Y O L123W L , Y O L106W L
  Y O L094C L , g O L02L,(1)
Cyanoamino acid metabolism Y D R351W L
Starch and sucrose metabolism Y E R095W L ,Y E R116C L
Linoleic acid metabolism N D R174C L
Butanoate metabolism Y B R271W L
Pantothenate and CoA biosynthesis Y O R274W L
Lipoic acid metabolism g L L01L ,Y N L158W L
Folate biosynthesis N M L013W L ,Y N L066W L ,Y N L050C L
Sesquiterpenoid and triterpenoid biosynthesis Y M R084W L
Aminoacyl-tRNA biosynthesis Y C L065W L ,Y C L047C L
  Y C L039W L ,N J R007C L ,Y N L010W L
Biosynthesis of unsaturated fatty acids Y F L029C L
Metabolic pathways Y C L065W L ,Y J R071W L
Biosynthesis of secondary metabolites Y J R038C6L
Biosynthesis of amino acids Y J R071W L ,Y O L123W L
  Y O L118C L ,Y O L106W L
  Y O L094C L ,Y O L093W L
  Y O L088C L ,g O L02L
Ribosome Y A R035W L ,Y J L026W L
RNA transport Y B L010C L
RNA polymerase Y L R140W L
Proteasome Y B L010C L
Phosphatidylinositol signaling system Y B R045C L
Meiosis - yeast Y O L106W L
  1. L means detected by covariance test, (1) means detected by kernel covariance test with parameter 1 and (10) means detected by kernel covariance test with parameter 10. The FDR of the covariance test, kernel covariance test with parameter 1 and kernel covariance test with parameter 10 are 0.20, 0.24 and 0.33 respectively. The FWER of the test by Tony Cai is 0.2