Table 1 PILER-CR algorithm parameters
Parameter | Value | Description |
|---|---|---|
Minrepeat | 16 | Minimum length of a repeat. |
Maxrepeat | 64 | Maximum length of a repeat. |
Minspacer | 8 | Minimum spacer length. |
Minarray | 3 | Minimum number of repeats in an array/cassette. |
Maxspacer | 64 | Maximum spacer length. |
Minrepeat ratio | 0,9 | Repeat length ratio |
Minspacer ratio | 0,75 | Spacer length ratio |
Mincons | 0,9 | A run of minarray repeats with at least mincons similarity is required for an array to be reported. The value is specified as fractional identity 0.0… 1.0, with 1.0 meaning identical sequences. |