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Table 1 Comparison of the computational time required for SimBoolNet, GINsim and the proposed model

From: Generalized logical model based on network topology to capture the dynamical trends of cellular signaling pathways

Number of nodes/edges SimBoolNet GINsim Our model
5/13 9.51s < 0.1s 0.09s
35/57 10.73s < 0.1s 0.43s
500/6124 72.88s Not applicable 10.68s
  1. Three networks are employed for simulation, where the numbers of the nodes/edges are 5/13, 35/57 and 500/6124, respectively. The simulation using GINsim on the third network could not finish within endurable time (hence marked “Not applicable”)