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Table 2 Gene targets and the predictors of sensitivity for the compounds

From: Integrative modeling of multi-omics data to identify cancer drivers and infer patient-specific gene activity

Compounds

Direct gene targets

Known sensitivity predictors

Sensitivity threshold

Resistance threshold

PLX4720

BRAF

BRAF mutation

A c t A r e a≥2.05

A c t A r e a≤0.47

AZD6244

MEK

BRAF mutation

A c t A r e a≥3.02

A c t A r e a≤0.69

Erlotinib

EGFR

EGFR mutation

A c t A r e a≥1.74

A c t A r e a≤0.42

Nutlin-3

MDM2

TP53 mutation

I C50≤4.26

I C50≥6.94

  

TP53 expression

  

BYL719

PIK3CA

PIK3CA mutation

E C50≤3.04

E C50>3.04

   

A m a x≤–30

A m a x>–30