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Table 2 Parameters of the reduced model

From: Multi-objective optimization framework to obtain model-based guidelines for tuning biological synthetic devices: an adaptive network case

Parameter

Description

Value

Unit

\(C_{{g_A}}, C_{{g_B}}, C_{{g_C}}\)

gA, gB, gC copy number

-

adim.

\(k_{{m_A}}, k_{{m_B}}, k_{{m_C}}\)

gA, gB, gC transcription rate

-

min −1

\(d_{{m_A}}, d_{{m_B}}, d_{{m_C}}\)

m A , m B , m C degradation rate

0.3624

min −1

\(k_{{p_A}}\)

m A translation rate

80

min −1

\(k_{{p_B}}, k_{{p_C}}\)

m B , m C translation rate

-

min −1

d A

A degradation rate

0.035

min −1

d B ,d C

B, C degradation rate

-

min −1

k d

inducer diffusion rate

0.06

min −1

k 2, k 3

(AI) and (AI) 2 association rate

0.1

min −1

k −2

(AI) dissociation rate

20

min −1

k −3

(AI) 2 dissociation rate

1

min −1

γ 1

gB promoter Hill constant

-

nM

γ 2

gC promoter coefficients

0.2

nM

γ 3,γ 4,γ 5

gC promoter coefficients

-

adim, adim, nM −1

β 1,β 2

gC promoter basal expression coefficients

0.05

adim, nM −1

d I ,d Ie

inducer degradation rate

0.0164

min −1

d AI ,d A I2

(AI), (AI) 2 degradation rate

0.035

min −1