|
Model
|
PDB coveragea
|
Homology model coverageb
|
PDB quality scorec
|
Homology model quality (TM-score)d
|
|---|
|
T. maritima
|
136/478
|
342
|
0.82 (0.86)
|
0.79
|
|
E. coli
|
490/1366
|
1366
|
0.77 (0.95)
|
0.82
|
-
aNumber of total genes with PDB structures (includes minimally modified) after QC/QA; bNumber of total genes with homology models. Note that there may be overlap between PDB and homology model coverage; cMean quality score of PDB structures in the GEM-PRO model for all available PDB structures. In parentheses are the subset of “best representative structures” for all metabolic gene (as ranked by the QC/QA pipeline), scaled (0, 1] where 0 is low quality and 1 is the highest quality; dMean quality score of the homology models taken from the I-TASSER TM-score metric, is the range [0,1] with a value >0.5 implying correct topology of the model [28]
