From: PFA toolbox: a MATLAB tool for Metabolic Flux Analysis

Initialization | |
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initPFAtoolbox | It starts the PFA Toolbox |

1: MFA problem formulation | |

define_MOC | It defines the model-based constraints |

define_PossMeasurements | It represents the measured fluxes |

define_MEC | It defines the measured-based constraints |

2: Computing estimations | |

solve_maxPoss | It calculates the most possible set of flux values |

solve_maxPossIntervals | It calculates the interval of most possible flux values |

solve_PossInterval | It calculates the interval of flux values with the desired possibility |

3: Plotting the estimations | |

plot_PossMeasurements | It plots measurements in possibilistic terms |

plot_distribution | It plots the distribution of a given flux |

plot_intervals | It plots interval estimates of a given flux |

4: Other | |

Solve_possintervalYMP | Advanced function; read its help. |

solve_Interval | It solves an Interval MFA problem |