Table 1 List of functions in the PFA Toolbox
From: PFA toolbox: a MATLAB tool for Metabolic Flux Analysis
Initialization | |
|---|---|
initPFAtoolbox | It starts the PFA Toolbox |
1: MFA problem formulation | |
define_MOC | It defines the model-based constraints |
define_PossMeasurements | It represents the measured fluxes |
define_MEC | It defines the measured-based constraints |
2: Computing estimations | |
solve_maxPoss | It calculates the most possible set of flux values |
solve_maxPossIntervals | It calculates the interval of most possible flux values |
solve_PossInterval | It calculates the interval of flux values with the desired possibility |
3: Plotting the estimations | |
plot_PossMeasurements | It plots measurements in possibilistic terms |
plot_distribution | It plots the distribution of a given flux |
plot_intervals | It plots interval estimates of a given flux |
4: Other | |
Solve_possintervalYMP | Advanced function; read its help. |
solve_Interval | It solves an Interval MFA problem |