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Table 2 Performance and runtimes on SMASH sampled human benchmark

From: SNVSniffer: an integrated caller for germline and somatic single-nucleotide and indel mutations

Caller NA12878 NA12878+ NA18507 NA19240
Sensitivity (%)  
SNVSniffer(M1) 98.9 98.9 99.0 99.1
SNVSniffer(M2) 98.9 98.9 98.9 99.0
SNVSniffer(M3) 98.8 98.8 98.9 99.0
SAMtools 99.2 99.2 99.3 99.4
GATK 99.1 99.1 99.3 99.5
FaSD 98.9 98.9 99.1 99.2
Time(s)  
SNVSniffer(M1) 226 203 190 206
SNVSniffer(M2) 560 541 474 1065
SNVSniffer(M3) 2550 2543 2093 3379
SAMtools 3730 3694 3147 3379
GATK 6541 6249 6321 5936
FaSD 2132 2054 1979 2068
  1. Best results are highlighted in boldface