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Table 5 Somatic indel calling performance comparison

From: SNVSniffer: an integrated caller for germline and somatic single-nucleotide and indel mutations

Error

Caller

Recall

Precision

F-score

1.0 %

SNVSniffer(M1)

30.20

24.35

26.96

 

VarScan2

14.91

17.71

16.19

1.5 %

SNVSniffer(M1)

30.20

24.35

26.96

 

VarScan2

15.26

17.53

16.32

2.0 %

SNVSniffer(M1)

30.20

24.36

26.97

 

VarScan2

14.83

17.22

15.94

  1. Best results are highlighted in boldface