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Table 5 Somatic indel calling performance comparison

From: SNVSniffer: an integrated caller for germline and somatic single-nucleotide and indel mutations

Error Caller Recall Precision F-score
1.0 % SNVSniffer(M1) 30.20 24.35 26.96
  VarScan2 14.91 17.71 16.19
1.5 % SNVSniffer(M1) 30.20 24.35 26.96
  VarScan2 15.26 17.53 16.32
2.0 % SNVSniffer(M1) 30.20 24.36 26.97
  VarScan2 14.83 17.22 15.94
  1. Best results are highlighted in boldface