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Table 6 Sensitivity and runtimes comparison using real tumors

From: SNVSniffer: an integrated caller for germline and somatic single-nucleotide and indel mutations

Dataset

SNVSniffer(M1)

VarScan2

SomaticSniper

JSM2

MuTect

Sensitivity (%)

 

T1

66.86

38.29

61.148

0.001

91.43

T2

82.35

35.29

63.73

0.00

93.14

T3

72.36

59.35

75.61

0.00

95.93

T4

93.55

83.87

87.10

0.00

96.77

T5

75.00

43.75

68.75

0.00

97.92

Time (h)

 

T1

2.67

5.75

1.58

10.41

22.87

T2

2.56

4.73

1.33

9.48

19.37

T3

2.41

4.30

1.34

7.39

19.27

T4

2.91

5.26

1.39

10.00

24.16

T5

2.87

4.75

1.55

8.11

20.50

  1. Best results are highlighted in boldface