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Table 3 GSEA classification of 358 genes that have significantly higher mean mutation scores in cluster 3 compared to cluster 1

From: Classification of breast cancer patients using somatic mutation profiles and machine learning approaches

GSEA gene families Cytokines/growth factors Transcription factors Homeodomain proteins Cell differentiation markers Protein kinases Translocated cancer genes Oncogenes Tumor suppressors
Tumor suppressors 0 1 0 0 0 1 0 4
Oncogenes 0 3 0 0 0 11 12  
Translocated cancer genes 0 4 0 0 0 12   
Protein kinases 0 0 0 1 16    
Cell differentiation markers 0 0 0 4     
Homeodomain proteins 0 3 3      
Transcription factors 0 25       
Cytokines and growth factors 3        
  1. Note that some of the genes in our gene list are not found in any GSEA (Gene Set Enrichment Analysis) gene family
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