Classification of breast cancer patients using somatic mutation profiles and machine learning approaches

BMC Systems Biology

Table 4 Distribution of genes to functionally distinct gene families, by GSEA

Transcription factors	Protein kinases	Translocated cancer genes	Oncogenes	Cell differentiation markers	Tumor suppressors	Homeodomain proteins	Cytokines and growth factors
ARID1B	ALPK3	AKAP9	AKAP9	CD44	APC	CUX2	LTBP3
BPTF	CDK20	CASC5	CASC5	ITGA2B	BRCA2	ZFHX3	SEMA5B
BRD1	CIT	EP300	MLL	L1CAM	EP300	ZFHX4	TG
BRPF1	EPHA1	MLL	MLLT4	MST1R	FANCA
CASZ1	GUCY2D	MLLT4	MYH9
CHD3	IRAK1	MYH9	NACA
CUX2	KALRN	NACA	NOTCH2
EP300	LRRK1	NUMA1	NUMA1
HIVEP1	MST1R	NUP98	NUP98
LMO7	PRKDC	RNF213	RNF213
MED12	RPS6KA4	TET1	TET1
MGA	SPEG	WHSC1	WHSC1
MLL	STK36
MLLT4	TRRAP
NCOR2	TTN
PHF3	WNK1
RERE
SALL2
SF1
SPEN
SREBF2
UBR4
WHSC1
ZFHX3
ZFHX4

ISSN: 1752-0509