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Table 4 Distribution of genes to functionally distinct gene families, by GSEA

From: Classification of breast cancer patients using somatic mutation profiles and machine learning approaches

Transcription factors Protein kinases Translocated cancer genes Oncogenes Cell differentiation markers Tumor suppressors Homeodomain proteins Cytokines and growth factors
ARID1B ALPK3 AKAP9 AKAP9 CD44 APC CUX2 LTBP3
BPTF CDK20 CASC5 CASC5 ITGA2B BRCA2 ZFHX3 SEMA5B
BRD1 CIT EP300 MLL L1CAM EP300 ZFHX4 TG
BRPF1 EPHA1 MLL MLLT4 MST1R FANCA   
CASZ1 GUCY2D MLLT4 MYH9     
CHD3 IRAK1 MYH9 NACA     
CUX2 KALRN NACA NOTCH2     
EP300 LRRK1 NUMA1 NUMA1     
HIVEP1 MST1R NUP98 NUP98     
LMO7 PRKDC RNF213 RNF213     
MED12 RPS6KA4 TET1 TET1     
MGA SPEG WHSC1 WHSC1     
MLL STK36       
MLLT4 TRRAP       
NCOR2 TTN       
PHF3 WNK1       
RERE        
SALL2        
SF1        
SPEN        
SREBF2        
UBR4        
WHSC1        
ZFHX3        
ZFHX4