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Table 2 Transcriptional profiles and a protein expression map of enzyme-encoding genes, TFs, and TF target genes and enzymes in Arabidopsis root apical meristem (vasculature)

From: The Arabidopsis phytohormone crosstalk network involves a consecutive metabolic route and circular control units of transcription factors that regulate enzyme-encoding genes

Enzyme Expressed TFs, TF target genes Expressed genes encoding enzymes Protein expression Crosstalk
(EC 1.3.1.-)
(Step 1)a
  AT3G55360 AT3G55360 Abscisic acid
Brassinosteroid
EC 1.14.13.-
(Step 2)a
DWF4(AT3G50660)
EIL3(AT1G73730)
BZR1(AT1G75080)
AT2G27690
AT5G04660
AT4G36380
AT5G38970
AT5G48000 Brassinosteroid
Jasmonic acid
EC 2.4.1.-
(Step 3)a
FT1(AT2G03220)
VRN1(AT3G18990)
UGT78D2(AT5G17050)
AT3G53160 AT3G21750
AT4G34138 AT1G73880
AT4G34135 AT1G78270
AT1G06000 AT2G30140
AT5G40390 AT2G28080
AT1G06000 Abscisic acid
Auxin
Brassinosteroid
Cytokinin
Salicylic acid
EC 1.14.11.23
(Step 5)a
MYB32(AT4G34990)
HY5(AT5G11260)
FLS1(AT5G08640)
MYB12(AT2G47460)
RGA1(AT2G01570)
GAI(AT1G14920)
AT3G50210
AT3G49630
AT3G19010
AT4G16770
  Gibberellin
Jasmonic acid
EC 2.1.1.-
(Step 6)a
  AT3G63410 AT5G54160 AT3G63410 Auxin
Gibberellin
EC 1.14.11.-
(Step 7)a
SPT(AT4G36930)
MYB32(AT4G34990)
GA2OX6(AT1G02400)
CBF1(AT4G25490)
GAI(AT1G14920)
DAG1(AT3G61850)
RGA1(AT2G01570)
DDF1(AT1G12610)
HY5(AT5G11260)
AT1G14130   Ethylene
Gibberellin
Jasmonic acid
EC 1.2.3.7
(Step 8)a
AAO1(AT5G20960) AT2G27150   Abscisic acid
Auxin
EC 2.4.1.121
(Step 9) a
  AT4G15550   Abscisic acid
Auxin
Salicylic acid
EC 6.3.-.-:
(Step 10)a
ARF7(AT5G20730)
DFL1(AT5G54510)
WES1(AT4G27260)
AT2G46370   Abscisic acid
Auxin
Jasmonic acid
EC 2.6.1.57
(Step 11)a
  AT1G70560 AT1G62960
AT5G51690
  Abscisic acid
Auxin
Jasmonic acid
EC 4.4.1.14
(Step 12)a
ACS6(AT4G11280)
MP(AT1G19850)
ARF2(AT5G62000)
ACS2(AT1G01480)
ACS8(AT4G37770)
AT5G51690 AT1G62960   Auxin
Cytokinin
Ethylene
Jasmonic acid
EC 1.14.17.4
(Step 13)a
EIN3(AT3G20770)
ATHB-1(AT3G01470)
ATACO2(AT1G62380)
AT1G05010 AT1G77330   Ethylene
EC 2.5.1.18 OBP1(AT3G50410)
GSTF8(AT2G47730)
ANAC019(AT1G52890)
AP2.3(AT3G16770)
AT2G30870 AT2G29440
AT2G29490 AT5G41210
AT1G75270 AT1G17170
AT1G27140 AT2G29480
AT2G30860 AT1G17190
AT4G19880 AT5G45020
AT5G41240 AT5G41220
AT5G44990 AT1G78340
AT2G29420 AT1G27130
AT2G29460 AT1G17180
AT2G29450 AT1G78380
AT2G29470 AT2G02390
AT2G30870
AT2G30860
AT2G47730
AT1G78380
Ethylene
Jasmonic acid
Salicylic acid
EC 1.1.1.1 MYC2(AT1G32640)
RAP2.12 (AT1G53910)
ADH1(AT1G77120)
ABF2(AT1G45249)
CBF2(AT4G25470)
MYB2(AT2G47190
AT5G43940 AT5G63620
AT5G19440 AT5G24760
AT5G43940
AT5G19440
Ethylene
Salicylic acid
EC 1.13.11.12 LOX3 (AT1G17420)
MYC2 (AT1G32640)
ORA47 (AT1G74930)
STZ(AT1G27730)
WRKY6(AT1G62300)
WRKY3(AT2G03340)
ANAC055(AT3G15500)
ANAC019(AT1G52890)
WRKY11(AT4G31550)
AT3G22400 AT1G67560   Abscisic acid
Jasmonic acid
EC 1.14.11.13 GA2OX6(AT1G02400)
DDF1(AT1G12610)
CBF1(AT4G25490)
AT1G14130 AT1G14120   Ethylene gibberellin
EC 1.14.13.93 BZR1(AT1G75080)
CPD(AT5G05690)
DWF4(AT3G50660)
AT4G19230
AT5G45340
AT5G38970
AT4G36380
AT5G48000
AT5G05690
Abscisic acid
Brassinosteroid
Ethylene
EC 2.3.1.74 TT4(AT5G13930)
MYB12(AT2G47460)
HYH(AT3G17609)
  AT5G13930 Auxin
Jasmonic acid
EC 1.14.19.2   AT5G16240
AT2G43710
AT3G02630
AT3G02630
AT2G43710
Jasmonic acid
Salicylic acid
EC 1.1.1.288   AT1G52340   Abscisic acid
Brassinosteroid
EC 2.4.1.12 VND7(AT1G71930) AT5G16910 AT3G03050
AT5G64740 AT5G09870
AT4G32410 AT4G39350
AT5G05170 AT2G21770
AT1G55850 AT2G33100
AT1G71930
AT4G32410
AT5G64740
AT5G05170
Abscisic acid
Ethylene
Jasmonic acid
EC 2.4.1.215   AT3G53160 AT1G78270
AT2G28080 AT2G30140
  Brassinosteroid
Cytokinin
EC 2.4.1.237   AT1G73880 AT4G34138
AT2G15490 AT4G34135
AT5G59580 AT5G59590
AT1G07250
  Abscisic acid
Auxin
Brassinosteroid
Salicylic acid
EC 2.4.1.263   AT4G34138 AT4G15550
AT4G34135 AT1G07260
AT2G30150 AT2G31750
AT1G07250
  Abscisic acid
Auxin
Salicylic acid
EC: 2.4.1.195   AT1G05680 AT2G30150
AT2G31750 AT1G24100
  Abscisic acid
Salicylic acid
  1. aIndicates consecutive metabolic route of controlling sets in the EAPCN model (see Fig. 3).
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