Table 7 Pearson’s correlation of functional similarity measures for three GOs using BMA against gene expression data (IEA+ and IEA-)
From: An improved method for functional similarity analysis of genes based on Gene Ontology
Methods | CC_IEA+ | CC_IEA- | MF_IEA+ | MF_IEA- | BP_IEA+ | BP_IEA- |
|---|---|---|---|---|---|---|
simUI | 0.4083 | 0.4049 | 0.2019 | 0.2047 | 0.2619 | 0.2558 |
simGIC | 0.4187 | 0.4222 | 0.2169 | 0.2168 | 0.2829 | 0.2801 |
Teng | 0.4192 | 0.4273 | 0.2228 | 0.2026 | 0.2607 | 0.2648 |
Wang | 0.3552 | 0.3822 | 0.2111 | 0.2312 | 0.2471 | 0.2572 |
Resnik | 0.4238 | 0.4206 | 0.2626 | 0.2506 | 0.2692 | 0.2674 |
JC | 0.2192 | 0.2853 | 0.1602 | 0.1937 | 0.1808 | 0.1993 |
Lin | 0.3742 | 0.4081 | 0.2248 | 0.2330 | 0.2502 | 0.2632 |
WIS | 0.4124 | 0.4367 | 0.2158 | 0.2070 | 0.2941 | 0.2799 |