Skip to main content

Table 2 Selected list of combined ChIP-Seq and RNA-Seq data for AR-related genes following induction of nac and csiR showing direct regulatory effect

From: Coordinated regulation of acid resistance in Escherichia coli

Gene symbol EcoCyc locus ChIP-Seq peak location Type Fold-change (FC) Log 2 (FC)
Nac-induced RNA-Seq
 gadE EG11544 3656717 genic 3.321 1.732
 sdhC EG10933 753984 intergenic 2.494 1.318
 evgA EG11609 2481403 intergenic 0.288 −1.797
 ompR EG10672 3534783 intergenic 0.894 −0.161
CsiR-induced RNA-Seq
 gadX EG12243 3663762 genic 3.958 1.985
 ydeO EG13797 1581558 genic 1.837 0.877
 gadW EG12242 3662685 intergenic 0.728 −0.458
 gdhA EG10372 1840440 genic 0.522 −0.937