Table 2 Selected list of combined ChIP-Seq and RNA-Seq data for AR-related genes following induction of nac and csiR showing direct regulatory effect
From: Coordinated regulation of acid resistance in Escherichia coli
Gene symbol | EcoCyc locus | ChIP-Seq peak location | Type | Fold-change (FC) | Log 2 (FC) |
|---|---|---|---|---|---|
Nac-induced RNA-Seq | |||||
 gadE | EG11544 | 3656717 | genic | 3.321 | 1.732 |
 sdhC | EG10933 | 753984 | intergenic | 2.494 | 1.318 |
 evgA | EG11609 | 2481403 | intergenic | 0.288 | −1.797 |
 ompR | EG10672 | 3534783 | intergenic | 0.894 | −0.161 |
CsiR-induced RNA-Seq | |||||
 gadX | EG12243 | 3663762 | genic | 3.958 | 1.985 |
 ydeO | EG13797 | 1581558 | genic | 1.837 | 0.877 |
 gadW | EG12242 | 3662685 | intergenic | 0.728 | −0.458 |
 gdhA | EG10372 | 1840440 | genic | 0.522 | −0.937 |