From: Predicting protein-binding regions in RNA using nucleotide profiles and compositions
 | #RBP-binding |  |  |  |  |  |  |
---|---|---|---|---|---|---|---|
RBP | RNA regions | Sensitivity | Specificity | Accuracy | PPV | NPV | MCC |
Our model | Â | Â | Â | Â | Â | Â | Â |
FUS | 64 | 93.75% | 94.00% | 93.90% | 90.91% | 95.92% | 0.873 |
FXR1 | 67 | 97.01% | 94.00% | 95.21% | 91.55% | 97.92% | 0.902 |
FXR2 | 80 | 66.25% | 94.00% | 81.67% | 89.83% | 77.69% | 0.638 |
IGF2BP2 | 79 | 74.68% | 94.00% | 85.47% | 90.77% | 82.46% | 0.709 |
LIN28A | 82 | 85.37% | 94.00% | 90.11% | 92.11% | 88.68% | 0.801 |
QKI | 77 | 84.42% | 94.00% | 89.83% | 91.55% | 88.68% | 0.793 |
TARDBP | 94 | 12.77% | 94.00% | 54.64% | 66.67% | 53.41% | 0.117 |
Weighted average | Â | 70.72% | 94.00% | 83.83% | 90.14% | 80.54% | 0.676 |
DeepBind | Â | Â | Â | Â | Â | Â | Â |
FUS | 64 | 32.81% | 42.00% | 38.41% | 26.58% | 49.41% | -0.246 |
FXR1 | 67 | 11.94% | 44.00% | 31.14% | 12.50% | 42.72% | -0.444 |
FXR2 | 80 | 15.00% | 55.00% | 37.22% | 21.05% | 44.72% | -0.320 |
IGF2BP2 | 79 | 41.77% | 51.00% | 46.93% | 40.24% | 42.58% | -0.072 |
LIN28A | 82 | 12.20% | 52.00% | 34.07% | 17.24% | 41.94% | -0.382 |
QKI | 77 | 83.12% | 75.00% | 78.53% | 71.91% | 85.23% | 0.576 |
TARDBP | 94 | 52.13% | 92.00% | 72.68% | 85.96% | 67.15% | 0.484 |
Weighted average |  | 36.28% | 58.71% | 48.91% | 40.53% | 54.29% | –0.051 |