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Table 1 Reaction rates considered in the model

From: A new efficient approach to fit stochastic models on the basis of high-throughput experimental data using a model of IRF7 gene expression as case study

Name

Definition

f IFN

\(V_{IFN}\left (\frac {IFN^{n}}{k^{n}_{IFN}+IFN^{n}}\right)\)

f dIFN

k dIFN ·I F N

f I S G F3

k I S G F3·I F N

f d I S G F3

k d I S G F3·I S G F3

\(f_{P_{a}}\)

\(k_{on}\left (\frac {ISGF3 \cdot IRF7dimer}{k_{aI3} \cdot k_{aI7} + k_{aI3} \cdot ISGF3 + k_{aI7}\cdot IRF7dimer + ISGF3 \cdot IRF7dimer}\right)(1-P_{a})\)

\(f_{dP_{a}}\)

k off ·P a

\(f_{mRNA_{A}}\)

k Active ·P a

\(f_{mRNA_{B}}\)

k Basal (1−P a )

f dmRNA

k dmRNA ·m R N A

f I R F7

k I R F7·m R N A

f I R F7p h o s p

k d I R F7·I R F7

f I R F7d i m e r

k I R F7d i m e r ·I R F7p h o s p·I R F7p h o s p

f d I R F7d i m e r

k d I R F7d i m e r ·I R F7d i m e r