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Table 2 Number of new modules from a tissue (rows) that are preserved on another tissue (columns) after applying the k-means to the standard WGCNA partitions

From: An additional k-means clustering step improves the biological features of WGCNA gene co-expression networks

(a) UKBEC brain tissues
  CRBL FCTX HIPP MEDU OCTX PUTM SNIG TCTX THAL WHMT    
CRBL 0 1 2 3 0 5 3 1 3 2    
FCTX 5 0 1 5 0 6 3 0 5 3    
HIPP 4 2 0 3 0 7 1 3 0 0    
MEDU 1 2 4 0 3 2 3 2 1 1    
OCTX 7 1 3 6 0 9 6 3 8 6    
PUTM 3 1 3 2 1 0 1 1 0 2    
SNIG 1 2 1 0 1 1 0 0 0 1    
TCTX 3 2 1 3 0 1 4 0 2 4    
THAL 2 2 3 1 1 1 0 0 0 -1    
WHMT 1 1 0 1 1 0 1 1 0 0    
(b) GTEx brain tissues
  AMYG ACCT CAUD CEHE CERE CTEX FCTX HIPP HYPO NUAC PUTM SPIN SNIG
AMYG 0 0 14 1 2 5 6 3 10 14 7 7 7
ACCT 0 0 0 3 1 3 -1 5 1 0 1 6 2
CAUD 2 3 0 2 -1 5 6 5 6 3 1 2 4
CEHE 2 0 1 0 8 0 0 0 4 1 2 0 0
CERE 1 2 1 15 0 4 1 1 0 0 1 1 1
CTEX 2 4 0 4 3 0 1 2 4 4 4 6 3
FCTX 4 5 6 1 2 4 0 3 0 1 4 1 2
HIPP 0 4 7 2 4 0 8 0 1 2 2 8 0
HYPO 2 9 7 4 5 6 5 11 0 3 4 1 1
NUAC 12 11 7 9 5 9 7 20 9 0 6 4 7
PUTM 1 -3 4 6 1 5 3 8 7 5 0 6 5
SPIN 4 2 1 -1 1 6 2 7 9 5 14 0 4
SNIG 15 12 5 0 0 18 4 9 14 7 13 6 0