Table 2 Number of new modules from a tissue (rows) that are preserved on another tissue (columns) after applying the k-means to the standard WGCNA partitions
(a) UKBEC brain tissues | |||||||||||||
CRBL | FCTX | HIPP | MEDU | OCTX | PUTM | SNIG | TCTX | THAL | WHMT | ||||
CRBL | 0 | 1 | 2 | 3 | 0 | 5 | 3 | 1 | 3 | 2 | |||
FCTX | 5 | 0 | 1 | 5 | 0 | 6 | 3 | 0 | 5 | 3 | |||
HIPP | 4 | 2 | 0 | 3 | 0 | 7 | 1 | 3 | 0 | 0 | |||
MEDU | 1 | 2 | 4 | 0 | 3 | 2 | 3 | 2 | 1 | 1 | |||
OCTX | 7 | 1 | 3 | 6 | 0 | 9 | 6 | 3 | 8 | 6 | |||
PUTM | 3 | 1 | 3 | 2 | 1 | 0 | 1 | 1 | 0 | 2 | |||
SNIG | 1 | 2 | 1 | 0 | 1 | 1 | 0 | 0 | 0 | 1 | |||
TCTX | 3 | 2 | 1 | 3 | 0 | 1 | 4 | 0 | 2 | 4 | |||
THAL | 2 | 2 | 3 | 1 | 1 | 1 | 0 | 0 | 0 | -1 | |||
WHMT | 1 | 1 | 0 | 1 | 1 | 0 | 1 | 1 | 0 | 0 | |||
(b) GTEx brain tissues | |||||||||||||
AMYG | ACCT | CAUD | CEHE | CERE | CTEX | FCTX | HIPP | HYPO | NUAC | PUTM | SPIN | SNIG | |
AMYG | 0 | 0 | 14 | 1 | 2 | 5 | 6 | 3 | 10 | 14 | 7 | 7 | 7 |
ACCT | 0 | 0 | 0 | 3 | 1 | 3 | -1 | 5 | 1 | 0 | 1 | 6 | 2 |
CAUD | 2 | 3 | 0 | 2 | -1 | 5 | 6 | 5 | 6 | 3 | 1 | 2 | 4 |
CEHE | 2 | 0 | 1 | 0 | 8 | 0 | 0 | 0 | 4 | 1 | 2 | 0 | 0 |
CERE | 1 | 2 | 1 | 15 | 0 | 4 | 1 | 1 | 0 | 0 | 1 | 1 | 1 |
CTEX | 2 | 4 | 0 | 4 | 3 | 0 | 1 | 2 | 4 | 4 | 4 | 6 | 3 |
FCTX | 4 | 5 | 6 | 1 | 2 | 4 | 0 | 3 | 0 | 1 | 4 | 1 | 2 |
HIPP | 0 | 4 | 7 | 2 | 4 | 0 | 8 | 0 | 1 | 2 | 2 | 8 | 0 |
HYPO | 2 | 9 | 7 | 4 | 5 | 6 | 5 | 11 | 0 | 3 | 4 | 1 | 1 |
NUAC | 12 | 11 | 7 | 9 | 5 | 9 | 7 | 20 | 9 | 0 | 6 | 4 | 7 |
PUTM | 1 | -3 | 4 | 6 | 1 | 5 | 3 | 8 | 7 | 5 | 0 | 6 | 5 |
SPIN | 4 | 2 | 1 | -1 | 1 | 6 | 2 | 7 | 9 | 5 | 14 | 0 | 4 |
SNIG | 15 | 12 | 5 | 0 | 0 | 18 | 4 | 9 | 14 | 7 | 13 | 6 | 0 |