Network name | TF-gene networks | Gene No. | Edge No. | Network density | Data generator | Data type | Ref. | |
---|---|---|---|---|---|---|---|---|
GNW100 | GNW100_1 | DREAM4 in Silico size 100 | 100 | 176 | 0.0356 | The TF-gene reference networks were subsets of source networks in GNW. In each dataset, 1/3 genes were randomly selected and perturbed. Each experiment was sampled at 21 time points. 3 replicates were generated by adding different amount of noises. The noises are simulated by GNW. All the parameter settings were defaults in GNW. | Time-series data with multifactorial perturbation | |
GNW100_2 | 100 | 249 | 0.0503 | |||||
GNW100_3 | 100 | 195 | 0.0394 | |||||
GNW100_4 | 100 | 211 | 0.0426 | |||||
GNW100_5 | 100 | 193 | 0.0390 | |||||
GNW500 | GNW500_1 | E.coli | 500 | 1365 | 0.0109 | |||
GNW500_2 | 500 | 867 | 0.0069 | |||||
GNW500_3 | 500 | 1107 | 0.0089 | |||||
GNW500_4 | 500 | 947 | 0.0076 | |||||
GNW500_5 | 500 | 1272 | 0.0102 | |||||
GNW1000 | GNW1000_1 | E.coli | 1000 | 2337 | 0.0047 | |||
GNW1000_2 | 1000 | 2455 | 0.0049 | |||||
GNW1000_3 | 1000 | 2089 | 0.0042 | |||||
GNW1000_4 | 1000 | 2171 | 0.0043 | |||||
GNW1000_5 | 1000 | 2249 | 0.0045 | |||||
GNW2000 | GNW2000_1 | Yeast | 2000 | 4738 | 0.0024 | |||
GNW2000_2 | 2000 | 4467 | 0.0022 | |||||
GNW2000_3 | 2000 | 5055 | 0.0025 | |||||
GNW2000_4 | 2000 | 5283 | 0.0026 | |||||
GNW2000_5 | 2000 | 4817 | 0.0024 | |||||
GNW3000 | GNW3000_1 | Yeast | 3000 | 7515 | 0.0017 | |||
GNW3000_2 | 3000 | 7998 | 0.0018 | |||||
GNW3000_3 | 3000 | 7626 | 0.0017 | |||||
GNW3000_4 | 3000 | 8075 | 0.0018 | |||||
GNW3000_5 | 3000 | 7333 | 0.0016 |