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Fig. 2 | BMC Systems Biology

Fig. 2

From: Reconstruction of the microalga Nannochloropsis salina genome-scale metabolic model with applications to lipid production

Fig. 2

Contributions by Subsystem. Left: Number of reactions per subsystem in the model, with reactions projected using CCMP537 and from new CDSs. The new CDSs generated from our sequencing, complemented those obtained from the CCMP537 genome of N. salina. Several reactions were added based on these new CDS, adding new reactions to the model. In the graph, blue indicate the number of reactions with gene associations based on the CCMP537 genome, green when it depends on both, genome and our transcriptome, and yellow when only the transcriptome was used to support the existence of that reaction. Here we only show the thirteen subsystems with more reactions. Right: Exclusive reactions by subsystem. When comparing the models of C. reinhardtii iRC1080 and our N. salina iNS934, we can find reactions that are exclusive to iRC1080 (in blue), shared between both models (green) and exclusive to iNS934 (yellow). Here we show only selected subsystems N. salina, plus Glycerolipid metabolism, which was almost completely rewritten

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