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Table 1 Qualitative validation of iNS934

From: Reconstruction of the microalga Nannochloropsis salina genome-scale metabolic model with applications to lipid production

  Media condition in vivo in silico Gene KO TFPN Reference Nannochloropsis species
Luminosity 4 μE (flourecent cool) - +   TN [54] sp
  40 μE (flourecent cool) - +   FP [54] sp
  480 μE (flourecent cool) + +   TP [54] sp
  5 μE (flourecent warm) + +   TP [91] gaditana
  15 μE (flourecent warm) + +   TP [91] gaditana
  50 μE (flourecent warm) + +   TP [91] gaditana
  100 μE (flourecent warm) + +   TP [91] gaditana
  200 μE (flourecent warm) + +   TP [91] gaditana
  450 μE (white led) + +   TP [91] gaditana
  1200 μE (white led) + +   TP [91] gaditana
  2100 μE (white led) + +   TP [91] gaditana
  3000 μE (white led) - +   FP [86] sp
  Red led 673 nm, mixotrophic + +   TP [92] sp
  Red led 673 nm, autotrophic + +   TP [92] sp
Carbon Glucose (mixotrophic) + +   TP [93] sp
  Glucose (heterotrophic) + +   TP [93] sp
  Ethanol (heterotrophic) + +   TP [93] sp
  Ethanol (mixotrophic) + +   TP [93] sp
  Inorganic carbon sources + +   FN [94] gaditana
Other Sodium + +   TP [95] oculata
  Nitrite + +   TP [96] sp
  Phosphate - -   TP This work salina
  Nitrate + +   TP [97] This work
  Ammonium + +   TP [98] This work
  Sulfate + +   TP [87] gaditana
  Urea levels + +   TP [99] This work
Knockout Ammonium + + Nitrate reductase TP [96] sp
  Nitrite + + Nitrate reductase TP [96] sp
  Nitrate - - Nitrate reductase TN [96] sp
  Ammonium + + Nitrite reductase TP [96] sp
  Nitrite - - Nitrite reductase TN [96] sp
  Nitrate - - Nitrite reductase TN [96] sp