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Table 5 Robustness of the phenotype similarity derived from phenotype vectors of different dimensions

From: Mimvec: a deep learning approach for analyzing the human phenome

 

TOP (%)

MRR (%)

AUC (%)

RSEQ

PSEQ

STRG

GOBP

RSEQ

PSEQ

STRG

GOBP

RSEQ

PSEQ

STRG

GOBP

Linkage Interval

Mimvec (50)

31.09

34.57

42.37

40.47

19.64

21.37

12.89

11.84

80.66

78.91

87.47

88.54

Mimvec (100)

32.33

35.88

43.54

41.69

19.62

21.22

12.72

11.97

80.67

79.07

87.65

88.41

Mimvec (150)

32.09

35.52

43.22

41.08

19.95

21.46

12.91

12.31

80.34

78.82

87.45

88.06

Mimvec (200)

32.33

35.97

43.15

41.56

20.10

21.59

13.06

12.43

80.19

78.69

78.30

87.94

Mimvec (250)

31.53

35.29

42.93

41.11

20.29

21.62

12.98

12.45

80.00

78.67

87.39

87.92

Mimvec (300)

32.05

35.38

43.20

41.13

20.22

21.83

13.05

12.61

80.07

78.45

87.31

87.76

Nearest Neighbor

Mimvec (50)

38.36

42.39

52.21

49.88

19.19

21.05

12.56

11.43

81.13

79.30

87.84

88.96

Mimvec (100)

40.37

44.11

54.19

51.19

19.19

20.89

12.38

11.59

81.13

79.46

88.02

88.81

Mimvec (150)

40.50

44.22

54.15

51.32

19.50

21.13

12.53

11.88

80.81

79.22

87.86

88.51

Mimvec (200)

40.74

44.35

53.69

51.36

19.68

21.25

12.69

12.06

80.63

79.10

87.70

88.33

Mimvec (250)

39.47

43.81

53.52

50.95

19.84

21.27

12.61

12.04

80.47

79.08

87.79

88.84

Mimvec (300)

40.21

43.97

53.78

50.84

19.78

21.47

12.66

12.21

80.52

79.28

87.74

88.18

Random Control

Mimvec (50)

42.72

48.01

58.61

54.78

17.83

20.43

11.87

10.68

82.50

79.91

88.53

89.73

Mimvec (100)

44.33

50.36

59.87

57.04

17.72

20.34

11.66

10.83

82.60

80.01

88.74

89.57

Mimvec (150)

44.46

49.50

59.81

56.50

18.08

20.59

11.86

11.08

82.24

79.76

88.54

89.32

Mimvec (200)

44.68

49.40

59.50

55.93

18.34

20.71

11.98

11.26

81.99

79.64

88.43

89.64

Mimvec (250)

43.94

49.25

59.18

55.91

18.48

20.71

11.95

11.22

81.84

79.64

88.45

89.68

Mimvec (300)

44.11

48.88

59.02

55.76

18.37

20.95

11.97

11.43

81.95

79.39

88.44

88.96

  1. Mimvec (50 ~ 300): phenotype similarity derived from phenotype vectors of different dimensions