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Table 5 Robustness of the phenotype similarity derived from phenotype vectors of different dimensions

From: Mimvec: a deep learning approach for analyzing the human phenome

  TOP (%) MRR (%) AUC (%)
RSEQ PSEQ STRG GOBP RSEQ PSEQ STRG GOBP RSEQ PSEQ STRG GOBP
Linkage Interval Mimvec (50) 31.09 34.57 42.37 40.47 19.64 21.37 12.89 11.84 80.66 78.91 87.47 88.54
Mimvec (100) 32.33 35.88 43.54 41.69 19.62 21.22 12.72 11.97 80.67 79.07 87.65 88.41
Mimvec (150) 32.09 35.52 43.22 41.08 19.95 21.46 12.91 12.31 80.34 78.82 87.45 88.06
Mimvec (200) 32.33 35.97 43.15 41.56 20.10 21.59 13.06 12.43 80.19 78.69 78.30 87.94
Mimvec (250) 31.53 35.29 42.93 41.11 20.29 21.62 12.98 12.45 80.00 78.67 87.39 87.92
Mimvec (300) 32.05 35.38 43.20 41.13 20.22 21.83 13.05 12.61 80.07 78.45 87.31 87.76
Nearest Neighbor Mimvec (50) 38.36 42.39 52.21 49.88 19.19 21.05 12.56 11.43 81.13 79.30 87.84 88.96
Mimvec (100) 40.37 44.11 54.19 51.19 19.19 20.89 12.38 11.59 81.13 79.46 88.02 88.81
Mimvec (150) 40.50 44.22 54.15 51.32 19.50 21.13 12.53 11.88 80.81 79.22 87.86 88.51
Mimvec (200) 40.74 44.35 53.69 51.36 19.68 21.25 12.69 12.06 80.63 79.10 87.70 88.33
Mimvec (250) 39.47 43.81 53.52 50.95 19.84 21.27 12.61 12.04 80.47 79.08 87.79 88.84
Mimvec (300) 40.21 43.97 53.78 50.84 19.78 21.47 12.66 12.21 80.52 79.28 87.74 88.18
Random Control Mimvec (50) 42.72 48.01 58.61 54.78 17.83 20.43 11.87 10.68 82.50 79.91 88.53 89.73
Mimvec (100) 44.33 50.36 59.87 57.04 17.72 20.34 11.66 10.83 82.60 80.01 88.74 89.57
Mimvec (150) 44.46 49.50 59.81 56.50 18.08 20.59 11.86 11.08 82.24 79.76 88.54 89.32
Mimvec (200) 44.68 49.40 59.50 55.93 18.34 20.71 11.98 11.26 81.99 79.64 88.43 89.64
Mimvec (250) 43.94 49.25 59.18 55.91 18.48 20.71 11.95 11.22 81.84 79.64 88.45 89.68
Mimvec (300) 44.11 48.88 59.02 55.76 18.37 20.95 11.97 11.43 81.95 79.39 88.44 88.96
  1. Mimvec (50 ~ 300): phenotype similarity derived from phenotype vectors of different dimensions