Table 2 The performance comparison on the Gavin data set in terms of normalized AUC values
From: A two-step framework for inferring direct protein-protein interaction network from AP-MS data
| Â | BGS | PCA | Y2H | ||||||
|---|---|---|---|---|---|---|---|---|---|
| Â | Initial | Filtered(ND) | Filtered(Silencer) | Initial | Filtered(ND) | Filtered(Silencer) | Initial | Filtered(ND) | Filtered(Silencer) |
SA | 0.78 | 0.79 ↑ | 0.79 ↑ | 0.76 | 0.76 ↓ | 0.76 ↓ | 0.77 | 0.80 ↑ | 0.81 ↑ |
PE | 0.63 | 0.77 ↑ | 0.73 ↑ | 0.62 | 0.74 ↑ | 0.71 ↑ | 0.54 | 0.76 ↑ | 0.68 ↑ |
DC | 0.71 | 0.74 ↑ | 0.77 ↑ | 0.64 | 0.70 ↑ | 0.72 ↑ | 0.73 | 0.80 ↑ | 0.82 ↑ |
Hart | 0.75 | 0.77 ↑ | 0.77 ↑ | 0.73 | 0.73 ↓ | 0.74 ↑ | 0.77 | 0.82 ↑ | 0.83 ↑ |