Table 4 The performance comparison on the Combined data set in terms of normalized AUC values
From: A two-step framework for inferring direct protein-protein interaction network from AP-MS data
| Â | BGS | PCA | Y2H | ||||||
|---|---|---|---|---|---|---|---|---|---|
| Â | Initial | Filtered(ND) | Filtered(Silencer) | Initial | Filtered(ND) | Filtered(Silencer) | Initial | Filtered(ND) | Filtered(Silencer) |
SA | 0.81 | 0.80 ↓ | 0.79 ↓ | 0.76 | 0.73 ↓ | 0.73 ↓ | 0.76 | 0.77 ↑ | 0.78 ↑ |
PE | 0.63 | 0.77 ↑ | 0.76 ↑ | 0.59 | 0.74 ↑ | 0.72 ↑ | 0.55 | 0.77 ↑ | 0.73 ↑ |
DC | 0.54 | 0.67 ↑ | 0.68 ↑ | 0.57 | 0.67 ↑ | 0.65 ↑ | 0.44 | 0.71 ↑ | 0.70 ↑ |
Hart | 0.72 | 0.77 ↑ | 0.78 ↑ | 0.70 | 0.75 ↑ | 0.75 ↑ | 0.65 | 0.74 ↑ | 0.75 ↑ |