Skip to main content

Table 1 The process of basic PSO algorithm

From: Hybrid method to solve HP model on 3D lattice and to probe protein stability upon amino acid mutations

Step 1

To initialize \(\{X^{0}_{i}|i=1,2\cdots m\}\) and \(\{V^{0}_{i}|i=1,2\cdots m\}\);

Step 2

To calculate \(E(X^{t}_{i})\), find \(P^{t}_{ib}\) and \(P^{t}_{gb}\) ;

Step 3

To update \(X^{t}_{i}\) and \(V^{t}_{i}\);

Step 4

To output P gb .