From: Hybrid method to solve HP model on 3D lattice and to probe protein stability upon amino acid mutations
Step 1
To initialize \(\{X^{0}_{i}|i=1,2\cdots m\}\) and \(\{V^{0}_{i}|i=1,2\cdots m\}\);
Step 2
To calculate \(E(X^{t}_{i})\), find \(P^{t}_{ib}\) and \(P^{t}_{gb}\) ;
Step 3
To update \(X^{t}_{i}\) and \(V^{t}_{i}\);
Step 4
To output P gb .