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Table 1 The process of basic PSO algorithm

From: Hybrid method to solve HP model on 3D lattice and to probe protein stability upon amino acid mutations

Step 1 To initialize \(\{X^{0}_{i}|i=1,2\cdots m\}\) and \(\{V^{0}_{i}|i=1,2\cdots m\}\);
Step 2 To calculate \(E(X^{t}_{i})\), find \(P^{t}_{ib}\) and \(P^{t}_{gb}\) ;
Step 3 To update \(X^{t}_{i}\) and \(V^{t}_{i}\);
Step 4 To output P gb .