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Table 6 Test sequences

From: Hybrid method to solve HP model on 3D lattice and to probe protein stability upon amino acid mutations

Sequence ID

Amino acids sequence

H-H

IBE number

Relative error

Test 1

H 4 P 5 HP 5 H 3 P 8 H

8

51 (52.3829)

0.0271

Test 2

H 4 P 5 HP 5 H 3 P 4 HP 3 H

9

167 (177.8417)

0.0649

Test 3

(HP 2 HP)5 HP

14

956 (921.1219)

0.0365

  1. IBE number is the iteration number of every sequence by TPPSO2 before the minimal free energy was found. The number in parentheses is IBE number calculated by fitting function
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BMC Systems Biology

ISSN: 1752-0509

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