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Table 7 Sequences with different lengths

From: Hybrid method to solve HP model on 3D lattice and to probe protein stability upon amino acid mutations

Sequence ID

Amino acids sequence

Length

H-H

IBE number

B

H 4 P 2 H 7 P 3 H

17

9

2

C

HPHP 2 H 2 PHP 2 HPH 2 P 2 HPH

20

11

11

D

P 2 HP 2 H 2 P 4 H 2 P 4 H 2 P 4 H 2

25

9

139

E

P 3 H 2 P 2 H 2 P 5 H 7 P 2 H 2 P 4 H(HP 2)2

36

17

432

F

P 2 H(P 2 H 2)2 P 5 H 10 P 6(H 2 P 2)2 HP 2 H 5

48

29

976

  1. H-H interactions were the same by TPPSO1 and TPPSO2. IBE numbers were computed by TPPSO2. These sequences were simulated by different methods, and every method only folds a part of sequences. TPPSO2 found the minimal free energy of all sequences
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BMC Systems Biology

ISSN: 1752-0509

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