Skip to main content

Advertisement

Table 3 List of abbreviated network node names for the EMT network and the ABA network

From: A framework to find the logic backbone of a biological network

Abbreviation Full name (Gene name/ official name)
EMT network:  
EMT Epithelial to Mesenchymal Transition
TGF β Transforming growth factor beta
PDGF Platelet derived growth factor
SHH Sonic Hedgehog
SNAI1 snail homolog 1 (Drosophila)
SNAI2 snail homolog 2 (Drosophila)
ZEB1 zinc finger E-box binding homeobox 1
ZEB2 zinc finger E-box binding homeobox 2
HEY1 hairy/enhancer-of-split related with YRPW motif 1
FOXC2 forkhead box C2 (MFH-1, mesenchyme forkhead 1)
TWIST1 twist basic helix-loop-helix transcription factor 1
ERK mitogen-activated protein kinases 1 & 3
RAS v-Ha-ras Harvey rat sarcoma viral oncogene
  homolog
miR200 microRNA 200b
RKIP phosphatidylethanolamine-binding protein 4;
  RAF1 the inhibitory protein
MEK mitogen-activated protein kinase kinases 1 & 2
CHD1L chromodomain helicase DNA binding protein 1-like
IGF1 Insulin-like growth factor 1
EGF epidermal growth factor
HGF hepatocyte growth factor
FGF fibroblast growth factor 2
Wnt wingless-type MMTV integration site family,
  member 1
NF κB nuclear factor of kappa light polypeptide gene
  enhancer in B-cells 1
βTrCP beta-transducin repeat containing E3 ubiquitin
  protein ligase
H1F1 α hypoxia inducible factor 1, alpha subunit
  (basic helix-loop-helix transcription factor)
FGFR fibroblast growth factor receptor 1
PDGFR platelet-derived growth factor receptor, alpha
  & beta polypeptides
SOS/GRB2 son of sevenless homolog 1 (Drosophila) and
  growth factor receptor-bound protein 2
GSK3 β glycogen synthase kinase 3 beta
Dest_complex Destruction complex
β-catenin_nuc nuclear β-catenin (cadherin-associated protein)
β-catenin_memb membrane-bound β-catenin
  (cadherin-associated protein)
GLI GLI family zinc finger 1 & 2
DSH dishevelled, dsh homolog 1
SUFU suppressor of fused homolog (Drosophila)
NOTCH_ic NOTCH (Drosophila) Homolog 1
E-cadherin cadherin 1, type 1, E-cadherin
TCF/LEF a basic helix-loop-helix transcription factor &
  lymphoid enhancer-binding factor 1
RAF v-raf-1 murine leukemia viral oncogene homolog 1
ILK integrin-linked kinase
AKT v-akt murine thymoma viral oncogene
EGR1 early growth response 1
c-fos FBJ murine osteosarcoma viral oncogene homolog
CsI recombination signal binding protein for
  immunoglobulin kappa J region
ABA network:  
ABA Abscisic acid
p H c Increase of the cytosolic pH level
AtRAC1 small GTPase RAC1
ABI1 ABA (abscisic acid)-insensitive 1
ABI2 ABA (abscisic acid)-insensitive 2
\(Ca^{2+}_{c}\) Cytosolic calcium
C a 2+ ATPase Ca2+ ATPases and Ca2+/H+ antiporters responsible
  for Ca2+ efflux from the cytosol
PLD δ Phospholipase D δ
ROS Reactive oxygen species
RBOH NADPH oxidases AtRBOH D and F
PA Phosphatidic acid
PI3P5K Phosphatidylinositol 3-phosphate 5-kinase
PtdIns(3,5)P2 Phosphatidylinositol 3,5-bisphosphate
V-PPase vacuolar proton pyrophosphatase
RCARs Regulatory Components of ABA Receptor
OST1 protein kinase OPEN STOMATA 1
CaIM C a 2+ influx across the plasma membrane
CIS C a 2+ influx to the cytosol from intracellular stores
AnionEM Anion efflux through the plasma membrane
K + Efflux K + efflux through the plasma membrane
H 2 O Efflux water efflux through the plasma membrane
MPK 9/12 Mitogen-activated protein kinases 9 and 12
CPK 3/21 Calcium-dependent protein kinases 3 and 21
SLAC1 Slow Anion Channel- associated 1